Config:DataSource: Difference between revisions
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== SampleEvaluator == | == SampleEvaluator == | ||
=== local === | === local === | ||
Evaluate samples locally using a native executable/script or a java class | Evaluate samples locally using a native executable/script or a java class | ||
<source lang="xml"> | <source xmlns:saxon="http://icl.com/saxon" lang="xml"> | ||
<[[Config:SampleEvaluator|SampleEvaluator]] id="local" type="ibbt.sumo.SampleEvaluators.LocalSampleEvaluator"><!-- Maximum number of times to resubmit a point (e.g., in case something went wrong) --> | <[[Config:SampleEvaluator|SampleEvaluator]] id="local" type="ibbt.sumo.SampleEvaluators.LocalSampleEvaluator"> | ||
<Option key="maxResubmissions" value="1"/><!-- If a sample takes longer than "sampleTimeout*average evaluation time of one sample" | <!-- Maximum number of times to resubmit a point (e.g., in case something went wrong) --> | ||
<Option key="maxResubmissions" value="1"/> | |||
<Option key="sampleTimeout" value="-1"/><!-- Can be set to "java" for java executables, to "external" for platform-specific | <!-- If a sample takes longer than "sampleTimeout*average evaluation time of one sample" | ||
seconds to evaluate it is removed from the pending list (set to -1 to disable) --> | |||
<Option key="simulatorType" value=""/><!-- Can be set to a number of seconds, if one simulator evaluation exceeds this timeout, | <Option key="sampleTimeout" value="-1"/> | ||
<!-- Can be set to "java" for java executables, to "external" for platform-specific | |||
binaries and to nothing at all for auto-detection.--> | |||
<Option key="simulatorType" value=""/> | |||
<!-- Can be set to a number of seconds, if one simulator evaluation exceeds this timeout, | |||
the simulation is aborted --> | |||
<!-- <Option key="timeout" value="12"/> --> | |||
<!-- Number of samples to evaluate concurrently, useful if you have a dual or multi-core machine --> | |||
<Option key="threadCount" value="1"/> | <Option key="threadCount" value="1"/> | ||
</[[Config:SampleEvaluator|SampleEvaluator]]> | </[[Config:SampleEvaluator|SampleEvaluator]]> | ||
Line 16: | Line 22: | ||
=== matlab === | === matlab === | ||
Evaluate samples using a matlab script (ie. your simulator is a matlab script) | Evaluate samples using a matlab script (ie. your simulator is a matlab script) | ||
<source lang="xml"> | <source xmlns:saxon="http://icl.com/saxon" lang="xml"> | ||
<[[Config:SampleEvaluator|SampleEvaluator]] id="matlab" type="ibbt.sumo.SampleEvaluators.matlab.MatlabSampleEvaluator"><!-- Maximum number of times to resubmit a point (e.g., in case something went wrong) --> | <[[Config:SampleEvaluator|SampleEvaluator]] id="matlab" type="ibbt.sumo.SampleEvaluators.matlab.MatlabSampleEvaluator"> | ||
<Option key="maxResubmissions" value="1"/><!-- If a sample takes longer than "sampleTimeout*average evaluation time of one sample" | <!-- Maximum number of times to resubmit a point (e.g., in case something went wrong) --> | ||
<Option key="maxResubmissions" value="1"/> | |||
<!-- If a sample takes longer than "sampleTimeout*average evaluation time of one sample" | |||
seconds to evaluate it is removed from the pending list (set to -1 to disable) --> | |||
<Option key="sampleTimeout" value="-1"/> | <Option key="sampleTimeout" value="-1"/> | ||
</[[Config:SampleEvaluator|SampleEvaluator]]> | </[[Config:SampleEvaluator|SampleEvaluator]]> | ||
Line 25: | Line 33: | ||
=== matlabClass === | === matlabClass === | ||
Evaluate samples using a matlab class | Evaluate samples using a matlab class | ||
<source lang="xml"> | <source xmlns:saxon="http://icl.com/saxon" lang="xml"> | ||
<[[Config:SampleEvaluator|SampleEvaluator]] id="matlabClass" type="ibbt.sumo.SampleEvaluators.matlab.MatlabClassSampleEvaluator"><!-- Maximum number of times to resubmit a point (e.g., in case something went wrong) --> | <[[Config:SampleEvaluator|SampleEvaluator]] id="matlabClass" type="ibbt.sumo.SampleEvaluators.matlab.MatlabClassSampleEvaluator"> | ||
<Option key="maxResubmissions" value="1"/><!-- If a sample takes longer than "sampleTimeout*average evaluation time of one sample" | <!-- Maximum number of times to resubmit a point (e.g., in case something went wrong) --> | ||
<Option key="maxResubmissions" value="1"/> | |||
<!-- If a sample takes longer than "sampleTimeout*average evaluation time of one sample" | |||
seconds to evaluate it is removed from the pending list (set to -1 to disable) --> | |||
<Option key="sampleTimeout" value="-1"/> | <Option key="sampleTimeout" value="-1"/> | ||
</[[Config:SampleEvaluator|SampleEvaluator]]> | </[[Config:SampleEvaluator|SampleEvaluator]]> | ||
Line 34: | Line 44: | ||
=== gridded === | === gridded === | ||
Evaluate samples using a gridded dataset | Evaluate samples using a gridded dataset | ||
<source lang="xml"> | <source xmlns:saxon="http://icl.com/saxon" lang="xml"> | ||
<[[Config:SampleEvaluator|SampleEvaluator]] id="gridded" type="ibbt.sumo.SampleEvaluators.datasets.GriddedDatasetSampleEvaluator"><!-- Using an ID you can specify which dataset from the simulator file to use --><!-- <Option key="id" value="someDataset"/> --></[[Config:SampleEvaluator|SampleEvaluator]]> | <[[Config:SampleEvaluator|SampleEvaluator]] id="gridded" type="ibbt.sumo.SampleEvaluators.datasets.GriddedDatasetSampleEvaluator"> | ||
<!-- Using an ID you can specify which dataset from the simulator file to use --> | |||
<!-- <Option key="id" value="someDataset"/> --> | |||
</[[Config:SampleEvaluator|SampleEvaluator]]> | |||
</source> | </source> | ||
=== scattered === | === scattered === | ||
Evaluate samples using a scattered dataset | Evaluate samples using a scattered dataset | ||
<source lang="xml"> | <source xmlns:saxon="http://icl.com/saxon" lang="xml"> | ||
<[[Config:SampleEvaluator|SampleEvaluator]] id="scattered" type="ibbt.sumo.SampleEvaluators.datasets.ScatteredDatasetSampleEvaluator"><!-- Using an ID you can specify which dataset from the simulator file to use --><!-- <Option key="id" value="someDataset"/> --></[[Config:SampleEvaluator|SampleEvaluator]]> | <[[Config:SampleEvaluator|SampleEvaluator]] id="scattered" type="ibbt.sumo.SampleEvaluators.datasets.ScatteredDatasetSampleEvaluator"> | ||
<!-- Using an ID you can specify which dataset from the simulator file to use --> | |||
<!-- <Option key="id" value="someDataset"/> --> | |||
</[[Config:SampleEvaluator|SampleEvaluator]]> | |||
</source> | </source> | ||
=== calcua === | === calcua === | ||
Evaluate samples on a SGE administered cluster through a remote, ssh reachable frontnode | Evaluate samples on a SGE administered cluster through a remote, ssh reachable frontnode | ||
<source lang="xml"> | <source xmlns:saxon="http://icl.com/saxon" lang="xml"> | ||
<[[Config:SampleEvaluator|SampleEvaluator]] id="calcua" type="ibbt.sumo.SampleEvaluators.sge.RemoteSGESampleEvaluator"><!-- Maximum number of times to resubmit a point (e.g., in case something went wrong) --> | <[[Config:SampleEvaluator|SampleEvaluator]] id="calcua" type="ibbt.sumo.SampleEvaluators.sge.RemoteSGESampleEvaluator"> | ||
<Option key="maxResubmissions" value="1"/><!-- If a sample takes longer than "sampleTimeout*average evaluation time of one sample" | <!-- Maximum number of times to resubmit a point (e.g., in case something went wrong) --> | ||
<Option key="maxResubmissions" value="1"/> | |||
<Option key="sampleTimeout" value="-1"/><!--The platform specs of the cluster--> | <!-- If a sample takes longer than "sampleTimeout*average evaluation time of one sample" | ||
seconds to evaluate it is removed from the pending list (set to -1 to disable) --> | |||
<Option key="sampleTimeout" value="-1"/> | |||
<!--The platform specs of the cluster--> | |||
<[[Config:Executable|Executable]] platform="unix" arch="x86"/> | <[[Config:Executable|Executable]] platform="unix" arch="x86"/> | ||
<[[Config:Backend|Backend]] id="remoteSGE" type="ibbt.sumo.SampleEvaluators.sge.RemoteSGEBackend"><!--ssh user name to login on the front node--> | <[[Config:Backend|Backend]] id="remoteSGE" type="ibbt.sumo.SampleEvaluators.sge.RemoteSGEBackend"> | ||
<Option key="user" value="dgorisse"/><!--Submissions happen from this front node, you need to have key-based ssh authentication--> | <!--ssh user name to login on the front node--> | ||
<Option key="frontNode" value="submit.calcua.ua.ac.be"/><!--Directory on the front node where input/output files, dependencies, etc. are stored--> | <Option key="user" value="dgorisse"/> | ||
<Option key="remoteDirectory" value="/storeA/users/dgorisse/output"/><!--poll for result files every xx seconds--> | <!--Submissions happen from this front node, you need to have key-based ssh authentication--> | ||
<Option key="pollInterval" value="20"/><!--queues we can submit to--> | <Option key="frontNode" value="submit.calcua.ua.ac.be"/> | ||
<Option key="queues" value="testqueue,normalprio,myrinet,cmpl_wis-inf"/><!--check for faster queues (more slots available) every xx seconds--> | <!--Directory on the front node where input/output files, dependencies, etc. are stored--> | ||
<Option key="queueRevisionRate" value="10"/><!--script on the frontnode that sets up the necessary shell environment--> | <Option key="remoteDirectory" value="/storeA/users/dgorisse/output"/> | ||
<!--poll for result files every xx seconds--> | |||
<Option key="pollInterval" value="20"/> | |||
<!--queues we can submit to--> | |||
<Option key="queues" value="testqueue,normalprio,myrinet,cmpl_wis-inf"/> | |||
<!--check for faster queues (more slots available) every xx seconds--> | |||
<Option key="queueRevisionRate" value="10"/> | |||
<!--script on the frontnode that sets up the necessary shell environment--> | |||
<Option key="environmentCommand" value=". ~/.profile;"/> | <Option key="environmentCommand" value=". ~/.profile;"/> | ||
</[[Config:Backend|Backend]]> | </[[Config:Backend|Backend]]> | ||
Line 63: | Line 90: | ||
=== begrid === | === begrid === | ||
Evaluate samples on a LCG administered grid through a remote, ssh reachable frontnode | Evaluate samples on a LCG administered grid through a remote, ssh reachable frontnode | ||
<source lang="xml"> | <source xmlns:saxon="http://icl.com/saxon" lang="xml"> | ||
<[[Config:SampleEvaluator|SampleEvaluator]] id="begrid" type="ibbt.sumo.SampleEvaluators.edg.RemoteEDGSampleEvaluator"><!-- Maximum number of times to resubmit a point (e.g., in case something went wrong) --> | <[[Config:SampleEvaluator|SampleEvaluator]] id="begrid" type="ibbt.sumo.SampleEvaluators.edg.RemoteEDGSampleEvaluator"> | ||
<Option key="maxResubmissions" value="1"/><!-- If a sample takes longer than "sampleTimeout*average evaluation time of one sample" | <!-- Maximum number of times to resubmit a point (e.g., in case something went wrong) --> | ||
<Option key="maxResubmissions" value="1"/> | |||
<!-- If a sample takes longer than "sampleTimeout*average evaluation time of one sample" | |||
seconds to evaluate it is removed from the pending list (set to -1 to disable) --> | |||
<Option key="sampleTimeout" value="-1"/> | <Option key="sampleTimeout" value="-1"/> | ||
<[[Config:Executable|Executable]] platform="unix" arch="x86"/> | <[[Config:Executable|Executable]] platform="unix" arch="x86"/> | ||
<[[Config:Backend|Backend]] id="remoteEDG" type="ibbt.sumo.SampleEvaluators.edg.RemoteEDGBackend"> | <[[Config:Backend|Backend]] id="remoteEDG" type="ibbt.sumo.SampleEvaluators.edg.RemoteEDGBackend"> | ||
Line 73: | Line 103: | ||
<Option key="frontNode" value="ui01.cmi.ua.ac.be"/> | <Option key="frontNode" value="ui01.cmi.ua.ac.be"/> | ||
<Option key="remoteDirectory" value="/home/edp/dgorissen/JobOutput"/> | <Option key="remoteDirectory" value="/home/edp/dgorissen/JobOutput"/> | ||
<Option key="pollInterval" value="25"/><!--Virtual Organization to use--> | <Option key="pollInterval" value="25"/> | ||
<Option key="vo" value="betest"/><!--script on the frontnode that sets up the necessary shell environment--> | <!--Virtual Organization to use--> | ||
<Option key="vo" value="betest"/> | |||
<!--script on the frontnode that sets up the necessary shell environment--> | |||
<Option key="environmentCommand" value=". /etc/profile;"/> | <Option key="environmentCommand" value=". /etc/profile;"/> | ||
</[[Config:Backend|Backend]]> | </[[Config:Backend|Backend]]> | ||
</[[Config:SampleEvaluator|SampleEvaluator]]> | </[[Config:SampleEvaluator|SampleEvaluator]]> | ||
</source> | </source> |
Revision as of 12:55, 13 February 2008
SampleEvaluator
local
Evaluate samples locally using a native executable/script or a java class
<[[Config:SampleEvaluator|SampleEvaluator]] id="local" type="ibbt.sumo.SampleEvaluators.LocalSampleEvaluator">
<!-- Maximum number of times to resubmit a point (e.g., in case something went wrong) -->
<Option key="maxResubmissions" value="1"/>
<!-- If a sample takes longer than "sampleTimeout*average evaluation time of one sample"
seconds to evaluate it is removed from the pending list (set to -1 to disable) -->
<Option key="sampleTimeout" value="-1"/>
<!-- Can be set to "java" for java executables, to "external" for platform-specific
binaries and to nothing at all for auto-detection.-->
<Option key="simulatorType" value=""/>
<!-- Can be set to a number of seconds, if one simulator evaluation exceeds this timeout,
the simulation is aborted -->
<!-- <Option key="timeout" value="12"/> -->
<!-- Number of samples to evaluate concurrently, useful if you have a dual or multi-core machine -->
<Option key="threadCount" value="1"/>
</[[Config:SampleEvaluator|SampleEvaluator]]>
matlab
Evaluate samples using a matlab script (ie. your simulator is a matlab script)
<[[Config:SampleEvaluator|SampleEvaluator]] id="matlab" type="ibbt.sumo.SampleEvaluators.matlab.MatlabSampleEvaluator">
<!-- Maximum number of times to resubmit a point (e.g., in case something went wrong) -->
<Option key="maxResubmissions" value="1"/>
<!-- If a sample takes longer than "sampleTimeout*average evaluation time of one sample"
seconds to evaluate it is removed from the pending list (set to -1 to disable) -->
<Option key="sampleTimeout" value="-1"/>
</[[Config:SampleEvaluator|SampleEvaluator]]>
matlabClass
Evaluate samples using a matlab class
<[[Config:SampleEvaluator|SampleEvaluator]] id="matlabClass" type="ibbt.sumo.SampleEvaluators.matlab.MatlabClassSampleEvaluator">
<!-- Maximum number of times to resubmit a point (e.g., in case something went wrong) -->
<Option key="maxResubmissions" value="1"/>
<!-- If a sample takes longer than "sampleTimeout*average evaluation time of one sample"
seconds to evaluate it is removed from the pending list (set to -1 to disable) -->
<Option key="sampleTimeout" value="-1"/>
</[[Config:SampleEvaluator|SampleEvaluator]]>
gridded
Evaluate samples using a gridded dataset
<[[Config:SampleEvaluator|SampleEvaluator]] id="gridded" type="ibbt.sumo.SampleEvaluators.datasets.GriddedDatasetSampleEvaluator">
<!-- Using an ID you can specify which dataset from the simulator file to use -->
<!-- <Option key="id" value="someDataset"/> -->
</[[Config:SampleEvaluator|SampleEvaluator]]>
scattered
Evaluate samples using a scattered dataset
<[[Config:SampleEvaluator|SampleEvaluator]] id="scattered" type="ibbt.sumo.SampleEvaluators.datasets.ScatteredDatasetSampleEvaluator">
<!-- Using an ID you can specify which dataset from the simulator file to use -->
<!-- <Option key="id" value="someDataset"/> -->
</[[Config:SampleEvaluator|SampleEvaluator]]>
calcua
Evaluate samples on a SGE administered cluster through a remote, ssh reachable frontnode
<[[Config:SampleEvaluator|SampleEvaluator]] id="calcua" type="ibbt.sumo.SampleEvaluators.sge.RemoteSGESampleEvaluator">
<!-- Maximum number of times to resubmit a point (e.g., in case something went wrong) -->
<Option key="maxResubmissions" value="1"/>
<!-- If a sample takes longer than "sampleTimeout*average evaluation time of one sample"
seconds to evaluate it is removed from the pending list (set to -1 to disable) -->
<Option key="sampleTimeout" value="-1"/>
<!--The platform specs of the cluster-->
<[[Config:Executable|Executable]] platform="unix" arch="x86"/>
<[[Config:Backend|Backend]] id="remoteSGE" type="ibbt.sumo.SampleEvaluators.sge.RemoteSGEBackend">
<!--ssh user name to login on the front node-->
<Option key="user" value="dgorisse"/>
<!--Submissions happen from this front node, you need to have key-based ssh authentication-->
<Option key="frontNode" value="submit.calcua.ua.ac.be"/>
<!--Directory on the front node where input/output files, dependencies, etc. are stored-->
<Option key="remoteDirectory" value="/storeA/users/dgorisse/output"/>
<!--poll for result files every xx seconds-->
<Option key="pollInterval" value="20"/>
<!--queues we can submit to-->
<Option key="queues" value="testqueue,normalprio,myrinet,cmpl_wis-inf"/>
<!--check for faster queues (more slots available) every xx seconds-->
<Option key="queueRevisionRate" value="10"/>
<!--script on the frontnode that sets up the necessary shell environment-->
<Option key="environmentCommand" value=". ~/.profile;"/>
</[[Config:Backend|Backend]]>
</[[Config:SampleEvaluator|SampleEvaluator]]>
begrid
Evaluate samples on a LCG administered grid through a remote, ssh reachable frontnode
<[[Config:SampleEvaluator|SampleEvaluator]] id="begrid" type="ibbt.sumo.SampleEvaluators.edg.RemoteEDGSampleEvaluator">
<!-- Maximum number of times to resubmit a point (e.g., in case something went wrong) -->
<Option key="maxResubmissions" value="1"/>
<!-- If a sample takes longer than "sampleTimeout*average evaluation time of one sample"
seconds to evaluate it is removed from the pending list (set to -1 to disable) -->
<Option key="sampleTimeout" value="-1"/>
<[[Config:Executable|Executable]] platform="unix" arch="x86"/>
<[[Config:Backend|Backend]] id="remoteEDG" type="ibbt.sumo.SampleEvaluators.edg.RemoteEDGBackend">
<Option key="user" value="dgorissen"/>
<Option key="frontNode" value="ui01.cmi.ua.ac.be"/>
<Option key="remoteDirectory" value="/home/edp/dgorissen/JobOutput"/>
<Option key="pollInterval" value="25"/>
<!--Virtual Organization to use-->
<Option key="vo" value="betest"/>
<!--script on the frontnode that sets up the necessary shell environment-->
<Option key="environmentCommand" value=". /etc/profile;"/>
</[[Config:Backend|Backend]]>
</[[Config:SampleEvaluator|SampleEvaluator]]>