Config:DataSource - Revision history

Javdrher: Javdrher moved page Config:SampleEvaluator to Config:DataSource: Component was renamed

2014-02-27T15:20:25Z

Javdrher moved page Config:SampleEvaluator to Config:DataSource: Component was renamed

← Older revision	Revision as of 15:20, 27 February 2014
(No difference)

Mnguyen: /* matlabDirect */

2012-02-28T10:12:24Z

matlabDirect

← Older revision		Revision as of 10:12, 28 February 2012
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	</source>		</source>

	=== ~~matlabDirect~~ ===		=== matlab ===
	Evaluate samples using a matlab script '''without''' using Java.		Evaluate samples using a matlab script '''without''' using Java. This is the default evaluator of Matlab m-files.

	<source xmlns:saxon="http://icl.com/saxon" lang="xml">		<source xmlns:saxon="http://icl.com/saxon" lang="xml">

Mnguyen: /* matlab */

2012-02-28T10:11:58Z

matlab

← Older revision		Revision as of 10:11, 28 February 2012
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	</[[Config:SampleEvaluator\|SampleEvaluator]]>		</[[Config:SampleEvaluator\|SampleEvaluator]]>
	</source>		</source>
	=== ~~matlab~~ ===		=== matlabOld ===
	Evaluate samples using a matlab script (ie. your simulator is a matlab script)		Evaluate samples using a matlab script (ie. your simulator is a matlab script). The evaluation is handled via the Java side of the toolbox.

	<source xmlns:saxon="http://icl.com/saxon" lang="xml">		<source xmlns:saxon="http://icl.com/saxon" lang="xml">
	<[[Config:SampleEvaluator\|SampleEvaluator]] id="matlab" type="ibbt.sumo.sampleevaluators.matlab.MatlabSampleEvaluator">		<[[Config:SampleEvaluator\|SampleEvaluator]] id="matlab" type="ibbt.sumo.sampleevaluators.matlab.MatlabSampleEvaluator">
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	</[[Config:SampleEvaluator\|SampleEvaluator]]>		</[[Config:SampleEvaluator\|SampleEvaluator]]>
	</source>		</source>


	=== matlabDirect ===		=== matlabDirect ===

Mnguyen at 16:52, 22 February 2012

2012-02-22T16:52:30Z

← Older revision		Revision as of 16:52, 22 February 2012
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			This page lists the various SampleEvaluators used by the SUMO Toolbox. To find out more about the data formats and how to define your own data generating code go [[Interfacing_with_the_toolbox\|here]].


	'''Generated for SUMO toolbox version 7.0'''.		'''Generated for SUMO toolbox version 7.0'''.
	''We are well aware that documentation is not always complete and possibly even out of date in some cases. We try to document everything as best we can but much is limited by available time and manpower. We are are a university research group after all. The most up to date documentation can always be found (if not here) in the default.xml configuration file and, of course, in the source files. If something is unclear please dont hesitate to [[Reporting problems\|ask]].''		''We are well aware that documentation is not always complete and possibly even out of date in some cases. We try to document everything as best we can but much is limited by available time and manpower. We are are a university research group after all. The most up to date documentation can always be found (if not here) in the default.xml configuration file and, of course, in the source files. If something is unclear please dont hesitate to [[Reporting problems\|ask]].''

Mnguyen: /* griddedDataset */

2012-02-22T16:50:25Z

griddedDataset

@@ Line 43: / Line 43: @@
 === griddedDataset ===
-Evaluate samples using a gridded dataset
+Evaluate samples using a gridded dataset. This data format does not include any inputs, but lists only outputs and only work for a uniform grid of data points. The order in which the output values are given determine their location in the grid.
 <source xmlns:saxon="http://icl.com/saxon" lang="xml">
 <[[Config:SampleEvaluator|SampleEvaluator]] id="griddedDataset" type="ibbt.sumo.sampleevaluators.datasets.GriddedDatasetSampleEvaluator">
@@ Line 50: / Line 68: @@
 </[[Config:SampleEvaluator|SampleEvaluator]]>
 </source>
 === scatteredDataset ===
 Evaluate samples using a scattered dataset. Each row of the dataset represents a data point. If the dimensionality of the problem is D (i.e. there are D inputs), the first D columns represent the inputs and the remaining columns the outputs. Note that complex number need to given as separate columns.

Mnguyen: /* scatteredDataset */

2012-02-22T16:41:24Z

scatteredDataset

← Older revision		Revision as of 16:41, 22 February 2012
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	</source>		</source>
	=== scatteredDataset ===		=== scatteredDataset ===
	Evaluate samples using a scattered dataset		Evaluate samples using a scattered dataset. Each row of the dataset represents a data point. If the dimensionality of the problem is D (i.e. there are D inputs), the first D columns represent the inputs and the remaining columns the outputs. Note that complex number need to given as separate columns.

	<source xmlns:saxon="http://icl.com/saxon" lang="xml">		<source xmlns:saxon="http://icl.com/saxon" lang="xml">
	<[[Config:SampleEvaluator\|SampleEvaluator]] id="scatteredDataset" type="ibbt.sumo.sampleevaluators.datasets.ScatteredDatasetSampleEvaluator">		<[[Config:SampleEvaluator\|SampleEvaluator]] id="scatteredDataset" type="ibbt.sumo.sampleevaluators.datasets.ScatteredDatasetSampleEvaluator">
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	</[[Config:SampleEvaluator\|SampleEvaluator]]>		</[[Config:SampleEvaluator\|SampleEvaluator]]>
	</source>		</source>

	=== calcua ===		=== calcua ===
	Evaluate samples on a SGE administered cluster through a remote, ssh reachable frontnode		Evaluate samples on a SGE administered cluster through a remote, ssh reachable frontnode

Mnguyen: /* matlabDirect */

2012-01-30T16:21:01Z

matlabDirect

← Older revision		Revision as of 16:21, 30 January 2012
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	<source xmlns:saxon="http://icl.com/saxon" lang="xml">		<source xmlns:saxon="http://icl.com/saxon" lang="xml">
	<SampleEvaluator id="matlabDirect" type="MatlabDirectSampleEvaluator">		<SampleEvaluator id="matlabDirect" type="MatlabDirectSampleEvaluator"/>
	</~~SampleEvaluator~~>
	</source>		</source>

Mnguyen: /* matlab */

2012-01-30T16:20:30Z

matlab

@@ Line 33: / Line 33: @@
 </[[Config:SampleEvaluator|SampleEvaluator]]>
 </source>
 === griddedDataset ===
 Evaluate samples using a gridded dataset

Icouckuy: AutoConfig for SUMO 6.2

2010-03-25T10:38:19Z

AutoConfig for SUMO 6.2

Icouckuy: AutoConfig for SUMO 6.2

2009-10-02T11:15:42Z

AutoConfig for SUMO 6.2

← Older revision		Revision as of 11:15, 2 October 2009
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	'''Generated for SUMO toolbox version 6.1'''.		'''Generated for SUMO toolbox version 6.2'''.
	''We are well aware that documentation is not always complete and possibly even out of date in some cases. We try to document everything as best we can but much is limited by available time and manpower. We are are a university research group after all. The most up to date documentation can always be found (if not here) in the default.xml configuration file and, of course, in the source files. If something is unclear please dont hesitate to [[Reporting problems\|ask]].''		''We are well aware that documentation is not always complete and possibly even out of date in some cases. We try to document everything as best we can but much is limited by available time and manpower. We are are a university research group after all. The most up to date documentation can always be found (if not here) in the default.xml configuration file and, of course, in the source files. If something is unclear please dont hesitate to [[Reporting problems\|ask]].''
	== SampleEvaluator ==		== SampleEvaluator ==

	=== local ===		=== local ===
	~~Evaluate samples locally using~~ a native executable/script or a java class		Use this if you data generator is a native executable, shell script, or java class
	<source xmlns:saxon="http://icl.com/saxon" lang="xml">		<source xmlns:saxon="http://icl.com/saxon" lang="xml">
	<[[Config:SampleEvaluator\|SampleEvaluator]] id="local" type="ibbt.sumo.SampleEvaluators.LocalSampleEvaluator">		<[[Config:SampleEvaluator\|SampleEvaluator]] id="local" type="ibbt.sumo.SampleEvaluators.LocalSampleEvaluator">
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	<Option key="sampleTimeout" value="-1"/>		<Option key="sampleTimeout" value="-1"/>
	<!-- Can be set to "java" for java executables, to "external" for platform-specific		<!-- Can be set to "java" for java executables, to "external" for platform-specific
	binaries and to nothing at all for auto-detection.-->		binaries/scripts and to nothing at all for auto-detection.-->
	<Option key="simulatorType" value=""/>		<Option key="simulatorType" value=""/>
	<!-- Can be set to a number of seconds, if one simulator evaluation exceeds this timeout,		<!-- Can be set to a number of seconds, if one simulator evaluation exceeds this timeout,
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	<!--script on the frontnode that sets up the necessary shell environment-->		<!--script on the frontnode that sets up the necessary shell environment-->
	<Option key="environmentCommand" value=". ~/.profile;"/>		<Option key="environmentCommand" value=". ~/.profile;"/>
	~~</[[Config:Backend\|Backend]]>~~
	~~</[[Config:SampleEvaluator\|SampleEvaluator]]>~~
	~~</source>~~
	~~=== begrid ===~~
	~~Evaluate samples on a LCG administered grid through a remote, ssh reachable frontnode~~
	~~<source xmlns:saxon="http://icl.com/saxon" lang="xml">~~
	~~<[[Config:SampleEvaluator\|SampleEvaluator]] id="begrid" type="ibbt.sumo.SampleEvaluators.edg.RemoteEDGSampleEvaluator">~~
	~~<!-- Maximum number of times to resubmit a point (e.g., in case something went wrong) -->~~
	~~<Option key="maxResubmissions" value="1"/>~~
	~~<!-- If a sample takes longer than "sampleTimeout*average evaluation time of one sample"~~
	~~seconds to evaluate it is removed from the pending list (set to -1 to disable) -->~~
	~~<Option key="sampleTimeout" value="-1"/>~~

	~~<[[Config:Executable\|Executable]] platform="linux" arch="x86"/>~~
	~~<[[Config:Backend\|Backend]] id="remoteEDG" type="ibbt.sumo.SampleEvaluators.edg.RemoteEDGBackend">~~
	~~<Option key="user" value="dgorissen"/>~~
	~~<Option key="frontNode" value="ui01.cmi.ua.ac.be"/>~~
	~~<Option key="remoteDirectory" value="/home/edp/dgorissen/JobOutput"/>~~
	~~<Option key="pollInterval" value="25"/>~~
	~~<!--Virtual Organization to use-->~~
	~~<Option key="vo" value="betest"/>~~
	~~<!--script on the frontnode that sets up the necessary shell environment-->~~
	~~<Option key="environmentCommand" value=". /etc/profile;"/>~~
	</[[Config:Backend\|Backend]]>		</[[Config:Backend\|Backend]]>
	</[[Config:SampleEvaluator\|SampleEvaluator]]>		</[[Config:SampleEvaluator\|SampleEvaluator]]>
	</source>		</source>

← Older revision		Revision as of 10:38, 25 March 2010
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	'''Generated for SUMO toolbox version 6.2'''.		'''Generated for SUMO toolbox version 7.0'''.
	''We are well aware that documentation is not always complete and possibly even out of date in some cases. We try to document everything as best we can but much is limited by available time and manpower. We are are a university research group after all. The most up to date documentation can always be found (if not here) in the default.xml configuration file and, of course, in the source files. If something is unclear please dont hesitate to [[Reporting problems\|ask]].''		''We are well aware that documentation is not always complete and possibly even out of date in some cases. We try to document everything as best we can but much is limited by available time and manpower. We are are a university research group after all. The most up to date documentation can always be found (if not here) in the default.xml configuration file and, of course, in the source files. If something is unclear please dont hesitate to [[Reporting problems\|ask]].''
	== SampleEvaluator ==		== SampleEvaluator ==
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	Use this if you data generator is a native executable, shell script, or java class		Use this if you data generator is a native executable, shell script, or java class
	<source xmlns:saxon="http://icl.com/saxon" lang="xml">		<source xmlns:saxon="http://icl.com/saxon" lang="xml">
	<[[Config:SampleEvaluator\|SampleEvaluator]] id="local" type="ibbt.sumo.~~SampleEvaluators~~.LocalSampleEvaluator">		<[[Config:SampleEvaluator\|SampleEvaluator]] id="local" type="ibbt.sumo.sampleevaluators.LocalSampleEvaluator">
	<!-- Maximum number of times to resubmit a point (e.g., in case something went wrong) -->		<!-- Maximum number of times to resubmit a point (e.g., in case something went wrong) -->
	<Option key="maxResubmissions" value="1"/>		<Option key="maxResubmissions" value="1"/>
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	Evaluate samples using a matlab script (ie. your simulator is a matlab script)		Evaluate samples using a matlab script (ie. your simulator is a matlab script)
	<source xmlns:saxon="http://icl.com/saxon" lang="xml">		<source xmlns:saxon="http://icl.com/saxon" lang="xml">
	<[[Config:SampleEvaluator\|SampleEvaluator]] id="matlab" type="ibbt.sumo.~~SampleEvaluators~~.matlab.MatlabSampleEvaluator">		<[[Config:SampleEvaluator\|SampleEvaluator]] id="matlab" type="ibbt.sumo.sampleevaluators.matlab.MatlabSampleEvaluator">
	<!-- Maximum number of times to resubmit a point (e.g., in case something went wrong) -->		<!-- Maximum number of times to resubmit a point (e.g., in case something went wrong) -->
	<Option key="maxResubmissions" value="1"/>		<Option key="maxResubmissions" value="1"/>
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	Evaluate samples using a gridded dataset		Evaluate samples using a gridded dataset
	<source xmlns:saxon="http://icl.com/saxon" lang="xml">		<source xmlns:saxon="http://icl.com/saxon" lang="xml">
	<[[Config:SampleEvaluator\|SampleEvaluator]] id="griddedDataset" type="ibbt.sumo.~~SampleEvaluators~~.datasets.GriddedDatasetSampleEvaluator">		<[[Config:SampleEvaluator\|SampleEvaluator]] id="griddedDataset" type="ibbt.sumo.sampleevaluators.datasets.GriddedDatasetSampleEvaluator">
	<!-- Using an ID you can specify which dataset from the simulator file to use -->		<!-- Using an ID you can specify which dataset from the simulator file to use -->
	<!-- <Option key="id" value="someDataset"/> -->		<!-- <Option key="id" value="someDataset"/> -->
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	Evaluate samples using a scattered dataset		Evaluate samples using a scattered dataset
	<source xmlns:saxon="http://icl.com/saxon" lang="xml">		<source xmlns:saxon="http://icl.com/saxon" lang="xml">
	<[[Config:SampleEvaluator\|SampleEvaluator]] id="scatteredDataset" type="ibbt.sumo.~~SampleEvaluators~~.datasets.ScatteredDatasetSampleEvaluator">		<[[Config:SampleEvaluator\|SampleEvaluator]] id="scatteredDataset" type="ibbt.sumo.sampleevaluators.datasets.ScatteredDatasetSampleEvaluator">
	<!-- Using an ID you can specify which dataset from the simulator file to use -->		<!-- Using an ID you can specify which dataset from the simulator file to use -->
	<!-- <Option key="id" value="someDataset"/> -->		<!-- <Option key="id" value="someDataset"/> -->
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	Evaluate samples on a SGE administered cluster through a remote, ssh reachable frontnode		Evaluate samples on a SGE administered cluster through a remote, ssh reachable frontnode
	<source xmlns:saxon="http://icl.com/saxon" lang="xml">		<source xmlns:saxon="http://icl.com/saxon" lang="xml">
	<[[Config:SampleEvaluator\|SampleEvaluator]] id="calcua" type="ibbt.sumo.~~SampleEvaluators~~.sge.RemoteSGESampleEvaluator">		<[[Config:SampleEvaluator\|SampleEvaluator]] id="calcua" type="ibbt.sumo.sampleevaluators.distributed.sge.RemoteSGESampleEvaluator">
	<!-- Maximum number of times to resubmit a point (e.g., in case something went wrong) -->		<!-- Maximum number of times to resubmit a point (e.g., in case something went wrong) -->
	<Option key="maxResubmissions" value="1"/>		<Option key="maxResubmissions" value="1"/>
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	<!--The platform specs of the cluster-->		<!--The platform specs of the cluster-->
	<[[Config:Executable\|Executable]] platform="linux" arch="x86_64"/>		<[[Config:Executable\|Executable]] platform="linux" arch="x86_64"/>
	<[[Config:Backend\|Backend]] id="remoteSGE" type="ibbt.sumo.~~SampleEvaluators~~.sge.RemoteSGEBackend">		<[[Config:Backend\|Backend]] id="remoteSGE" type="ibbt.sumo.sampleevaluators.distributed.sge.RemoteSGEBackend">
	<!--ssh user name to login on the front node-->		<!--ssh user name to login on the front node-->
	<Option key="user" value="dgorisse"/>		<Option key="user" value="dgorisse"/>